Studies
on the Fungi in Seasonally Inundated Sediment Habitat along South East Coast of
India
Madhanraj
P.1*, Manorajan S.2, Nadimuthu N.3 and Panneerselvam
A.4
1Dept of Microbiology, Thanthai
Hans Roever College of Arts and Science, Perambalur - 621 212, Tamil Nadu, India.
2Biology Education Centre, Uppsala University, SE-752
36 Uppsala, Sweden
3Dept. of Plant science, Avvaiyar
Govt. College for Women, Karaikal 609 602, Pondicherry U.T., India
4Dept. of Botany and Microbiology, A.V.V.M. Sri Pushpam College (Autonomous), Poondi-613 503, Thanjavur (Dt.), Tamilnadu, India
ABSTRACT:
In seasonally inundated sediments of Manianthivu of Nagapattinam
district, southeast coast of India, a total number of 24 species belonged to 5 genera were
recorded. They were assignable to Phycomycete (1
species) and Deuteromycetes (23 species). They
exhibited spatio-temporal changes. The genus Aspergillus was
constituted by the maximum of 19 species followed by Trichoderma (2 species). All
other genera (Absidia, Botrytis and Fusarium) were represented by one
species each. The soil characteristics such as pH (8.1 to 8.9), electrical
conductivity (0.11 to 1.28 dSm-1), cation
exchange capacity (8.01 to 9.5 c.mol proton+/kg), organic carbon
(0.05 to 0.18%), available nitrogen (0.012 to 0.018%), available phosphorus
(0.002 to 0.005%), available potassium (0.013 to 0.047 ppm),
available zinc (0.39 to 0.57 ppm), available iron
(2.12 to 2.83 ppm), available copper (0.19 to 0.31 ppm), available manganese (1.41 to 1.52 ppm),
calcium (3.2 to 5.2 mg/kg), magnesium(3.2 to 3.9 mg/kg), sodium (0.52 to 1.22
mg/kg) and potassium (0.02 to 0.07 mg/kg) were also showed variation during
different seasons. The investigation was carried out by collections and
examination of sediment samples during
January 2007 December 2008, at seasonal intervals.
KEYWORDS: Fungi, soil characteristics, inundated sediment.
INTRODUCTION:
The coastal ecosystem is characterized by frequent
disturbances, which affect the structure of the ecological communities by
removing established species and allowing fugitive species to colonize the
disturbed area. The impact of geomorphological
changes on marine organisms ranging from meiofauna to
large aquatic mammals has been reported earlier (Gremare,
2003). The marine soft-bottom experiences physical disturbances due to
hurricanes (Boesch et al., 1976), storms (Thiste et al., 1995), ray feeding pits (Van Blaricom, 1982) etc. Tsunamies
sudden inundation of coastal areas, due
to earth quake in the seas, have caused extensive damage to the shore and
foreshore area of coastal system, resulting in greater physical damage to flora
and fauna of the region, and also changed
the sediment structure and food resources (Rajandran
et al., 2005).
Seawater inundates the coastal regions to same extant
due to tidal fluctuations. The magnitudes vary greatly according to the lunar system.
The areas that are inundation due to there systemic cycle is called intertidal
areas, and these areas are characterized with unique organismal
diversity.
But the study area Manianthivu
is a site with unique feature along the Nagapattinam,
where the area is inundated due to the continues
flow of water during the monsoon season, and exposed during the seasons of a
year. The present study was carried out to find out the fungal ecology in this
seasonally inundated habitat that lies along the southeast coast of Tamil Nadu.
MATERIALS AND METHOD:
The sampling
station:
The fungi were isolated from the coastal soils of Manianthivu, Nagapattinam districts,
it is one of the coastal districts of Tamil Nadu.This
station is located at a distance of 3 km from Vedaranyam.
Salt pans are located in close proximity to the station. The site has no
vegetation. Flooding is noticed only during the monsoon season. During rest of
the seasons salt deposition is seen on the surface. The soil is clay in nature.
Analysis of Mycoflora:
Soil samples were collected from 10 different locations
seasonally for a period of two years from January 2007 to December 2008, dividing a calendar year into four seasons viz., Post monsoon (January
March), Summer (April June), Pre-monsoon
(July September) and Monsoon (October December), based on the north
east monsoon, which is prevailing in the study area.
In each station, the soil samples were collected up to
a depth within 10 cm using a metal spatula sterilized every time with 70 per cent
alcohol. The samples were kept in new polythene bags, sealed and transported to
the laboratory immediately for the mycological examination. For the analysis of
soil nutrients, one kg of soil was separately collected in polythene bags from
each station.
Dilution plating technique described by Warcup (1950) was used to isolate the fungi from soils.
Soil sample weighting 1g was diluted in 10 ml of 50% seawater (1:1 v/v seawater
(30 ppt): distilled water). One ml of the diluted
sample was poured and spread on Petri plates containing sterilized PDA medium (Himedia) supplemented with streptopencillin
antibiotic solution (1%@16/L) in replicates. The inoculated plates were
incubated in a dust free cupboard at the room temperature (24±2°C) for 7
days.
The colonies growing on PDA plates with different
morphology were counted separately. Semipermanent
mounts ware prepared using lactophenol cotton blue mountant and examined microscopically.
Their characters were analyzed and were compared with
the standard works of Raper and Thom (1949), Von Arx (1974), Ainsworth et
al. (1973); Raper and Fennell (1965) and Ellis
(1976) for their identification.
Number of species is referred as species diversity and
Population density is expressed in terms of Colony Forming Unit (CFU) per gram
of soil with dilution factor. Percentage contribution of individual species to
the total population was worked out as follows.
In order to assess the dominance
of individual species in each site percentage contribution was worked out as
follows.
No. of colonies of a
fungus in a sample
% contribution =
-------------------------------------------x 100
Total number all
colonies of all the
species
in a sample
Analysis of physico-chemical characteristics of the soil:
Moisture content was estimated by finding the weight
difference of known quantity of soil before and after drying in a hot air oven
at 60°C for 6 hours. Soil samples after removing the debris were suspended in
distilled water (1:2 w/v) and allowed to settle down the sand particles. The pH
of the suspension was read using pH meter (
Organic carbon content was determined by adopting chromic
acid wet digestion method as described by Walkley and
Black (1934); available nitrogen was estimated by alkaline permanganate method
as described by Subbiah and Asija
(1956) and available phosphorus by Brayl method as
described by Bray and Kutz (1945). Available
potassium was extracted from soil with neutral 1 N ammonium acetate (1:5) and
the potassium content in the extract was determined by using flame photometer (Standfold and English, 1949). Calcium (Neutral 1 N NH4
OAC extractable 1:5) was extracted with neutral 1 N ammonium acetate and the
available calcium in the extract was determined by versenate
method (
RESULT AND DISCUSSION:
The present study revealed the existence of 24 species
of fungi belonging to 5 genera, which includes large members of the Deuteromycetes (23 species), and a Phycomycete.
All these fungal species were reported earlier from soils and a variety of substrates
in the terrestrial environment (Gilman, 1965) and also reported from oceans and
estuaries (Johnson and Sparrow, 1961), as facultative forms to marine habitats.
Table
1. Total number of colonies,
mean density (CFU/g) and percentage contribution of fungi recorded during
different season from Manianthivu
|
S. No |
Name of the
organism |
2007 |
2008 |
Total no. of
colonies |
% contribution |
||||||||||||||
|
Post monsoon |
Summer |
Premonsoon |
Monsoon |
Post monsoon |
Summer |
Premonsoon |
Mosoon |
||||||||||||
|
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
TNC |
MD0 |
||||
|
1. |
Absidia glauca |
- |
- |
2 |
0.66 |
3 |
1 |
- |
- |
7 |
2.33 |
8 |
2.66 |
5 |
1.66 |
- |
- |
25 |
6.88 |
|
3. |
Aspergillus albicans |
3 |
1 |
- |
- |
2 |
0.66 |
3 |
1 |
- |
- |
- |
- |
- |
- |
3 |
1 |
11 |
3.03 |
|
2. |
A. awamori |
4 |
1.33 |
4 |
1.33 |
4 |
1.33 |
- |
- |
4 |
1.33 |
5 |
1.66 |
2 |
0.66 |
2 |
0.66 |
25 |
6.88 |
|
4. |
A. candidus |
- |
- |
2 |
0.66 |
- |
- |
- |
- |
- |
- |
4 |
1.33 |
3 |
1 |
- |
- |
9 |
2.47 |
|
5. |
A. conicus |
- |
- |
- |
- |
5 |
1.66 |
- |
- |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
9 |
2.47 |
|
6. |
A. flavipes |
2 |
0.66 |
- |
- |
- |
- |
7 |
2.33 |
8 |
2.66 |
- |
- |
- |
- |
- |
- |
17 |
4.68 |
|
7. |
A. fumigatus |
7 |
2.33 |
5 |
1.66 |
- |
- |
- |
- |
4 |
1.33 |
3 |
1 |
- |
- |
7 |
2.33 |
26 |
7.16 |
|
8. |
A. humicola |
5 |
1.66 |
- |
- |
7 |
2.33 |
4 |
1.33 |
- |
- |
4 |
1.33 |
- |
- |
8 |
2.66 |
28 |
7.71 |
|
9. |
A. luchuensis |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
1.10 |
|
10. |
A. nidulans |
- |
- |
7 |
2.33 |
- |
- |
- |
- |
- |
- |
2 |
0.66 |
- |
- |
- |
- |
9 |
2.47 |
|
11. |
A. ochraceous |
2 |
0.66 |
- |
- |
- |
- |
5 |
1.66 |
- |
- |
- |
- |
- |
- |
- |
- |
7 |
1.92 |
|
12. |
A. oryzae |
- |
- |
3 |
1 |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
7 |
1.92 |
|
13. |
A. phoenicis |
1 |
0.33 |
4 |
1.33 |
- |
- |
- |
- |
5 |
1.66 |
4 |
1.33 |
5 |
1.66 |
9 |
3 |
28 |
7.71 |
|
s |
A. rubber |
- |
- |
- |
- |
5 |
1.66 |
7 |
2.33 |
6 |
2 |
- |
- |
3 |
1 |
8 |
2.66 |
29 |
7.98 |
|
15. |
A. rugulosus |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
6 |
2 |
6 |
1.65 |
|
16. |
A. tamari |
4 |
1.33 |
3 |
1 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
7 |
1.92 |
|
17. |
A. terricola |
- |
- |
- |
- |
2 |
0.66 |
- |
- |
- |
- |
3 |
1 |
- |
- |
- |
- |
5 |
1.37 |
|
18. |
A. ustus |
- |
- |
- |
- |
3 |
1 |
4 |
1.33 |
- |
- |
- |
- |
7 |
2.33 |
- |
- |
14 |
3.85 |
|
19. |
A. variecolor |
3 |
1 |
5 |
1.66 |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
- |
- |
6 |
2 |
18 |
4.95 |
|
20. |
A. wentii |
3 |
1 |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
4 |
1.33 |
11 |
3.03 |
|
21. |
Bortrytis cinerea |
2 |
0.66 |
7 |
2.33 |
8 |
2.66 |
- |
- |
- |
- |
5 |
1.66 |
6 |
2 |
- |
- |
28 |
7.71 |
|
22. |
Fusarium semitectum |
4 |
1.33 |
- |
- |
- |
- |
7 |
2.33 |
- |
- |
3 |
1 |
5 |
1.66 |
3 |
1 |
22 |
6.06 |
|
23. |
Trichoderma harzianum |
3 |
1 |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
1.33 |
- |
- |
- |
- |
7 |
1.92 |
|
24. |
T. koeningii |
- |
- |
8 |
2.66 |
- |
- |
- |
- |
- |
- |
3 |
1 |
- |
- |
- |
- |
11 |
3.03 |
|
|
Total |
43 |
14.3 |
50 |
16.7 |
43 |
14.3 |
37 |
12.3 |
38 |
12.7 |
52 |
17.3 |
44 |
14.7 |
56 |
18.7 |
363 |
|
TNC Total Number of colonies, MD Mean density
Table 2. Physico-chemical
characteristics of soil collected from Manianthivu during different occasions
|
Parameters |
Postmonsoon 07 |
Summer 07 |
Premonsoon 07 |
Monsoon 07 |
Postmonsoon 08 |
Summer 08 |
Premonsoon 08 |
Monsoon 08 |
|
pH |
8.1 |
8.3 |
8.7 |
8.3 |
8.2 |
8.2 |
8.6 |
8.9 |
|
Electrical conductivity (dSm-1) |
1.28 |
1.08 |
0.13 |
0.12 |
1.26 |
1.09 |
0.11 |
0.15 |
|
Cation exchange capacity (c.mol proton+/kg) |
8.78 |
8.82 |
9.5 |
8.7 |
8.62 |
8.01 |
9.3 |
8.4 |
|
Organic Carbon (%) |
0.05 |
0.15 |
0.07 |
0.16 |
0.18 |
0.06 |
0.08 |
0.14 |
|
Available nitrogen (%) |
0.018 |
0.015 |
0.013 |
0.016 |
0.017 |
0.012 |
0.013 |
0.015 |
|
Available phosphorus (%) |
0.004 |
0.004 |
0.002 |
0.003 |
0.003 |
0.002 |
0.003 |
0.005 |
|
Available potassium (ppm) |
0.013 |
0.047 |
0.038 |
0.027 |
0.029 |
0.034 |
0.045 |
0.027 |
|
Available zinc (ppm) |
0.51 |
0.46 |
0.48 |
0.52 |
0.53 |
0.42 |
0.39 |
0.51 |
|
Available iron (ppm) |
2.83 |
2.71 |
2.12 |
2.14 |
2.65 |
2.52 |
2.49 |
2.51 |
|
Available copper (ppm) |
0.25 |
0.25 |
0.31 |
0.29 |
0.30 |
0.28 |
0.20 |
0.19 |
|
Available manganese (ppm) |
1.49 |
1.47 |
1.42 |
1.47 |
1.50 |
1.49 |
1.52 |
1.41 |
|
Calcium (mg/kg) |
5.2 |
5.1 |
3.2 |
4.5 |
4.3 |
4.1 |
5.1 |
3.2 |
|
Magnesium (mg/kg) |
3.2 |
3.7 |
3.9 |
3.2 |
3.4 |
3.5 |
3.2 |
3.6 |
|
Sodium (mg/kg) |
1.08 |
1.07 |
0.76 |
1.22 |
0.52 |
1.25 |
1.01 |
0.97 |
|
Potassium (mg/kg) |
0.02 |
0.03 |
0.04 |
0.05 |
0.07 |
0.06 |
0.02 |
0.02 |
The species diversity (number of species) spelled
variation during different seasons. It
was narrow in the range from 7 to 13 species. Thirteen species was recorded
during post monsoon season in 2007 and summer season in 2008, 11 species during
summer season in 2007, 10 species during pre monsoon in 2007 and premonsoon and
monsoon seasons in 2008 and 7 species during monsoon season in 2007 and post
monsoon season in 2008. In the general monsoon and postmonsoon
seasons recorded the less diversity than the summer seasons. It was because of inundation
of sampling station during monsoon seasons, and the fungi isolated are
terrestrial in nature.
Mean population density of fungi varied from 12.3 to
18.7 ΄ 102 CFU/g with the minimum in the samples
collected during monsoon season in 2007 and maximum in the samples collected
during monsoon season in 2008. Of 24 species belonged to 5 genera, the genus Aspergillus was
constituted by the maximum of 19 species followed by Trichoderma (2 species) and all
other genera (Absidia, Botrytis and Fusarium) were represented by one
species each (Table 1).
Percentage contribution of the individual species to
the total fungal population at all the seasons showed variation. The maximum
percentage contribution of 7.98% was foemed with Aspergillus rubber. This was followed by A. humicola, A. phoenicis and
Botrytis cinerea
(7.71% each); A. fumigatus
(7.16%);Absidia glauca and A. awamori
(6.88% each); Fusarium semitectum
(6.06%), Aspergillus variecolor
(4.95%), A. flavipes
(4.68%), A. ustus
(3.85%), A. albicans,
A. wentii
and Trichoderma koeningii
(3.03% each), A. candidus,
A. conicus
and A. nidulans
(2.47% each), A. ocharaceous,
A. oryzae, A. tamari and T. harzianum (1.92% each), A. rugulosus
(1.65%) and A. terricola
(1.37%) and A. luchuensis
(1.10%) (Table 1)
Aspergilli formed the bulk which together contributed 67.56%. The
dominance of Aspergilli in all kind of coastal
marine soils was reported as unique feature but different investigations have
identified different species of Aspergilli as
dominant one in different regions. Evidently, Prabhu et al. (1991) identified A.
Edaphic characteristics are believed to be responsible for the
establishment of biotic community of any of the soil ecosystem. Hence, the soil
characteristics were analysed along with the fungal
community structure.
Soil characteristics such as pH (8.1 to 8.9),
electrical conductivity (0.11 to 1.28 dSm-1), cation
exchange capacity (8.01 to 9.5 c.mol proton+/kg), organic carbon
(0.05 to 0.18%), available nitrogen (0.012 to 0.018%), available phosphorus
(0.002 to 0.005%), available potassium (0.013 to 0.047 ppm),
available zinc (0.39 to 0.57 ppm), available iron
(2.12 to 2.83 ppm), available copper (0.19 to 0.31 ppm), available manganese (1.41 to 1.52 ppm),
calcium (3.2 to 5.2 mg/kg), magnesium(3.2 to 3.9 mg/kg), sodium (0.52 to 1.22
mg/kg) and potassium (0.02 to 0.07 mg/kg) showed variation during different seasons.
These values represent the marine characteristics and are comparable with other
marine habitats (Nadimuthu, 1998; Chandhuri
et al., 2009; Madhanraj
et al., 2010) (Table-2).
Correlation between the physico-chemical characteristics and total fungal colony:
No correlation could be derived between the fungal
population density and physico chemical
characteristics, though there is significant positive correlation between
electrical conductivity and available iron (r=0.784; P<0.05), and a
available copper and potassium (r=0.778; P<0.05) and significant negative
correlations were observed between pH and electrical conductivity (r=-0.800;
P<0.05) and available manganese and magnesium (r=0.707; P<0.05). Thus in
the study area, the submergence and exposure of the sediment during different
seasons may be a factor responsible for fungal diversity than the other
physic-chemical factor.
ACKNOWLEDGEMENT:
The authors thank the Secretary and Correspondent
A.V.V.M. Sri Pushpam College, Poondi
615 503, Thanjavur Dt. for providing laboratory
facilities.
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Received on 16.02.2011
Modified on 25.02.2011
Accepted on 15.05.2011
© A&V Publication all right reserved
Research J.
Science and Tech. 3(4): July-August. 2011: 175-179